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Benchmark set of proteins.For each of the 64 proteins in the benchmark set, following are displayed: 4 letter code PDB id and 1 letter code chain id, number of amino acids (Naa), number of secondary structure elements(Nsse), number of α-helices (Nα), number of β-strands (Nβ), contact...
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Representation of the levels of similarity of chagas-informative peptides to a region within a subfamily of t. cruzi protein-antigens.... composition at each alignment position, using the standard single-letter codes....
Amino acid substitutions in slovakian vdpv strain #783 at different antigenic sites.... Differences from PV2 Sabin are indicated by one letter code of amino acid; -, identical with PV2Sabin.
Alignment of retn and retnl protein sequences.... The human Retn sequence is shown at the top in single letter code....
Structural overlay of in-silico modelled (a) ldeno (magenta), 1oep (sky blue) and 2xsx (green) in ribbon representation (left) and (b) ldald (coral), 1epx (grey) and 2ald (green) in ribbon representation (yellow).... Fully conserved residues are labelled as single letter code while unique residues belonging to LdEno and LdAld are labelled as three letter code with star marks.
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Breaking substitution ciphers using a. relaxation algorithm... Every code letter is assigned probabilities of representing plaintext letters....
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Sequence analysis under selective pressure at variable positions in chimera enzymes.Amino acids are represented by the one code letter....
Optimal variable length codes (arbitrary symbol cost and equal code word probability) The problem of constructing minimum-redundancy prefix codes for the general discrete noiseless channel without constraints is solved for unequal code letter costs, provided that the symbols encoded are assumed to be equally probable....

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